pylimma.plot_mds

pylimma.plot_mds(x, top=500, labels=None, pch=None, cex=1.0, dim_plot=(0, 1), gene_selection='pairwise', xlab=None, ylab=None, var_explained=True, ax=None, **kwargs)

Multidimensional-scaling plot. Port of R limma’s plotMDS.default.

Dimensions are 0-based (pylimma convention).

Parameters:

• top (int)

• cex (float)

• dim_plot (tuple[int, int])

• gene_selection (str)

• xlab (str | None)

• ylab (str | None)

• var_explained (bool)