pylimma.plot_md

pylimma.plot_md(object, column=0, coef=None, xlab='Average log-expression', ylab='log-fold-change', main=None, status=None, zero_weights=False, ax=None, **kwargs)

Mean-difference plot. Port of R limma’s plotMD.

Dispatch and numeric substrate mirror plot_ma exactly (plotMA and plotMD use identical matrix-path computations in R). The only behavioural difference is that when coef is supplied for an MArrayLM, it overrides column.

Parameters:

• column (int)

• coef (int | None)

• xlab (str)

• ylab (str)

• main (str | None)

• zero_weights (bool)