pylimma.ave_dups

pylimma.ave_dups(x, ndups=2, spacing=1, weights=None)

Average over duplicate spots.

Computes the (weighted) mean across replicate spots for each gene.

Parameters:

• x (ndarray) – Expression matrix, shape (n_spots, n_arrays).

• ndups (int, default 2) – Number of duplicates.

• spacing (int, default 1) – Spacing between duplicates.

• weights (ndarray, optional) – Weights matrix with same shape as x.

Returns:

Averaged matrix, shape (n_genes, n_arrays).

Return type:

ndarray