pylimma
  • Installation
  • Quickstart
  • API reference

Worked examples

  • Differential Expression Analysis of the ALL Chiaretti Microarray Dataset with pylimma
  • Differential Expression Analysis of Mouse Mammary RNA-seq with pylimma
  • Differential Splicing Analysis with pylimma (pasilla dataset)
  • Differential Expression Analysis of Yoruba HapMap RNA-seq with pylimma
  • Single-cell pseudobulk differential expression with pylimma (Kang 2018 PBMC)
  • Differential abundance analysis of proteomics data with pylimma

Validation

  • Parity with R limma
  • Known differences from R limma
  • Fixture-first validation strategy
  • Benchmarks
pylimma
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© Copyright 2026, John Mulvey. Based on R limma by Gordon Smyth et al..

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