pylimma.volcano_plot

pylimma.volcano_plot(fit, coef=0, style='p-value', highlight=0, names=None, hl_col='blue', xlab='Log2 Fold Change', ylab=None, pch='o', cex=0.35, ax=None, **kwargs)

Volcano plot of log-fold-change vs significance.

Port of R limma’s volcanoplot. coef is 0-based (pylimma convention). style is one of "p-value" or "b-statistic".

Parameters:

• coef (int | str)

• style (str)

• highlight (int)

• hl_col (str)

• xlab (str)

• ylab (str | None)

• cex (float)