pylimma.camera

pylimma.camera(y, index, design=None, contrast=None, weights=None, use_ranks=False, allow_neg_cor=False, inter_gene_cor=0.01, trend_var=False, sort=True, directional=True, **kwargs)

Competitive gene-set test with inter-gene correlation.

Port of R limma’s camera.default.

Return type:

DataFrame

Parameters:

• weights (ndarray | None)

• use_ranks (bool)

• allow_neg_cor (bool)

• inter_gene_cor (float | None)

• trend_var (bool)

• sort (bool)

• directional (bool)